collagen---ncbi

Col1a2 [Squalus acanthias] 白斑角鲨

GenBank: ABY71234.1

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LOCUS ABY71234 1192 aa linear VRT 31-OCT-2009

DEFINITION Col1a2, partial [Squalus acanthias].

ACCESSION ABY71234

VERSION ABY71234.1 GI:165881936

DBSOURCE accession EU241875.1

KEYWORDS .

SOURCE Squalus acanthias (spiny dogfish)

ORGANISM Squalus acanthias

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;

Elasmobranchii; Squalea; Hypnosqualea; Squaliformes; Squaloidei;

Squalidae; Squalus.

REFERENCE 1 (residues 1 to 1192)

AUTHORS Zhang,G. and Cohn,M.J.

TITLE Collagen distribution in developing sharks provides molecular

evidence for skin as exotendon and for the evolutionary loss of

bone

JOURNAL Unpublished

REFERENCE 2 (residues 1 to 1192)

AUTHORS Zhang,G. and Cohn,M.J.

TITLE Direct Submission

JOURNAL Submitted (23-OCT-2007) Zoology, University of Florida, 223 Bartram

Hall, Gainesville, FL 32611-8525, USA

COMMENT Method: conceptual translation supplied by author.

FEATURES Location/Qualifiers

source 1..1192

Protein Region Region /organism=\"Squalus acanthias\"

/db_xref=\"taxon:7797\"

<1..>1192

/product=\"Col1a2\"

1..221

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

233..291

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

Region Region /db_xref=\"CDD:1968\"

329..387

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

3..446

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

Region 973..1191

/region_name=\"COLFI\"

/note=\"Fibrillar collagen C-terminal domain; cl02436\"

/db_xref=\"CDD:198675\"

CDS 1..1192

/gene=\"Col1a2\"

/coded_by=\"EU241875.1:<1..>3577\"

/codon_start=2

ORIGIN

1 sgrkghrgyn gldgikgdvg iagmkgetgn sgsngspgll glrggpgerg rvggagpsgp

61 rgsdgmsgps gppgpmgtgg ppgfpgspgl kgelgphgar gpsgaqgsrg epgasgpvgp

121 lgllgnagan gitgskgavg tpgiagapgf pgptglagqh gtlgpaglrg lsgepgaigi

181 nrgipgsngr

kgetgskgep gdagpsgvag prgeegkqgp rgevgsqgli gisgergshg

241 ksgpagavge

aggmglpgrr gesgsfgakg ppgdigrpge sgipgarglv gstgnigapg

301 egrsgaagsa gprgqagmmg fpgpkgatga lgkpgdrggv gpsgargaag kdgevgaqgp

361 ggvsgavgar gesgpagssg fqgvpgpsga vgelgkpgdr girgdsgtpg asgsrgergl

421 pgergaagsq gltgsrgaqg apgsdggkge vgvagipghq gpqgsmgmsg eqggagtpgp

481 kgekgdhgpv gpqgntgidg prgapgsaga pgpsgpsgdr gesgsaghsg aagargtpge

541 hpgvagvpgl

rgeagragpt gfagppgadg qpgakgetgv agskgevgpa gsiglagasg

601 qgvigssgps gmtgfpgpag ragapgpagp qgpigpagpf gnsgpqgprg dsgaqgrsgg

661 lpgvsgpngl

pgpsgphgfp gdkgpagesg ptgapgspgp qgflgssgll glpgtrgehg

721 pgpsgpagph gargaagavg pggltgqhge agrdgnhgnd gapgraggag pkgergeggr

781 vgapgsggqp gshghagpvg ksgnrgepgp tgatgalgpl gprglpgpqg prgekgnagd

841 kdgvsghsga

agvrglkglr gpgglqglpg lsgtsgepgs hgpagpsgpr gpsgpagpsg

901 mgpvghrgrp gdhgpsgppg ppglrgfpga aggnyevsyd aeyyradqpa avrekdvevd

961 aklkvltnqi enirspegsk knparscrdl rlshpewksd yywidpnqgc ildairvycd

1021 fvsgetcvha npdiierknw wnnknpnekk hiwfgetind gvqftyndeh itpfvmgtql

1081 tflhllsnea sqnvtyhckn svaymdeetg nlkksvvllg sndvelraeg nsrftysvle

1141 dgctrhtgew sktvieyrtq ktsrlpfmdi apmdiggpeq efgldigpvc fk

//

type I procollagen alpha 1 chain [Raja kenojei] 平背鯆魮

GenBank: BAD98524.1

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LOCUS BAD98524 1463 aa linear VRT 01-JUN-2006

DEFINITION type I procollagen alpha 1 chain [Okamejei kenojei].

ACCESSION BAD98524

VERSION BAD98524.1 GI:65736617

DBSOURCE accession AB195842.1

KEYWORDS .

SOURCE Okamejei kenojei (ocellate spot skate)

ORGANISM Okamejei kenojei

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;

Elasmobranchii; Squalea; Hypnosqualea; Pristiorajea; Batoidea;

Rajiformes; Rajidae; Okamejei.

REFERENCE 1

AUTHORS Hwang,J.H., Yokoyama,Y., Mizuta,S. and Yoshinaka,R.

TITLE cDNA cloning and characterization of Type I procollagen alpha1

chain in the skate Raja kenojei

JOURNAL Comp. Biochem. Physiol. B, Biochem. Mol. Biol. 144 (1), 1-10 (2006)

PUBMED 16563827

REFERENCE 2 (residues 1 to 1463)

AUTHORS Hwang,J., Yokoyama,Y., Mizuta,S. and Yoshinaka,R.

TITLE Direct Submission

JOURNAL Submitted (30-NOV-2004) Yoshihiro Yokoyama, Fukui Prefectural

University, Department of Marine Bioscience, Faculty of

Biotechnology; 1-1 gakuen-cho, Obama, Fukui 917-0003, Japan

(E-mail:***************.jp,Tel:81-770-52-6300(ex.1605),

Fax:81-770-52-6003)

FEATURES Location/Qualifiers

source 1..1463

Protein Region Region /organism=\"Okamejei kenojei\"

/db_xref=\"taxon:432798\"

1..1463

/product=\"type I procollagen alpha 1 chain\"

33..88

/region_name=\"VWC\"

/note=\"von Willebrand factor type C domain; cl02515\"

/db_xref=\"CDD:199384\"

259..318

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

Region Region 478..534

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

508..567

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

Region 547..604

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

Region Region pfam01391\"

/db_xref=\"CDD:1968\"

3..700

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

1243..1462

/region_name=\"COLFI\"

/note=\"Fibrillar collagen C-terminal domain; cl02436\"

/db_xref=\"CDD:198675\"

CDS 1..1463

/gene=\"SkCOL1A1\"

/coded_by=\"AB195842.1:143..4534\"

ORIGIN

1 mfsfvdtrtl lllaatlvvg rcqaeddane kgcikdgqty sdkdiwkpep ckicvcdggq

61 vlcdeimcde indcpnaeip fgeccaicpe hgqdgttypt gpriqgpegp kgepgpkgdr

121 glpglpgrdg ipgtpgrdgp pgppglpgta ggnflpqmsg gyeggysekt

sggipmpgpm

181 gpmgprgapg pagspgpqgf qgrqgetgea gapgpmgprg pagppgkngd dgehgkagrp

241 gdrgppgpqg argfpgtpgl pgikghrgvn gldgakgdsg pagpkgetgs pgengapgam

301 gprgiagerg rpgatgpagv rgndgasgaa gppgavgpsg ppgfpgapga kgeagpagsr

361 gadgatgarg eagnpgpagp tgapgsagsd gapgakggvg apgisgapgf pgprgpsgpq

421 gavgatgpkg nngdsgapga kgeagakgds giagpqgapg psgeegkrgs rgepgvqglp

481 gspgergsag nrgfpgpegl vgakgipger gspgpagpkg atgesgrtge pglpgtrglt

541 gspgspgadg kpgpsgpagq dgrpgpagai gqrgqpgvmg fpgpkgtage sgktgergiv

601 gpaglvglpg kdgdigapga tgpagpager geqgitgapg fqgppgqvga agehgksgeq

661 gipgavgppg stgprgergf tgergspgam gptgargspg ssgsegakgd

agppgapggq

721 gapglqgmpg ergasglpgp kgargesgvk gadgapgkdg mrgmtgpigp pghagvvgek

781 geagppgpsg pvgargstgd rgepgapgpa gfagppgadg qpgakgeagd tgakgeagpa

841 gptgavgiag ppgptgatga kgargaagsp gatgfpggvg rvgppgpsgn agptglpgpp

901 gkegakgirg etgavgrpge pgiagpagpa gekgapgsdg psgapglpgp qglsgtrgvl

961 gltgmrgerg nmgpqgqtge agkqgpvgap gergppgpmg ppglagpsge agregspgae

1021 gapgrdgavg akgdrgeaga tgasgapgap gapgpvgpsg ktgdrgepga agpagpsgpm

1081 gprgangltg prgdrgesge ngargikghr gfpgaqglpg ppgppgeqgq sgpsgasgpr

1141 gpagpsgssg kdgasgmpgp igppgprgrt geigpvgppg ppgipgppgp shggfdfqfa

1201 apqiekgpdp lryfraddag avadrdiqvd ttlksltqqi esirspegtr knpartcrdl

1261 kmchadwksg dywidpnqgc ildvirvycn metgetcvys spqsipqknw yttknpkekk

1321 hvwfgenmdg gfqfgyggdd gvlasdvaiq itflrlmsse atqnityhck nsiaymdeea

1381 gnlkkavllq gsneieirae gnsrftysvt edgctthtgd wgrtvieykt tktsrlpiid

1441 iapmdvggad qefgvdigpv cfl

//

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type V/XI procollagen alpha 1 chain [Raja kenojei] 平背鯆魮

GenBank: BAE16360.1

FASTA Graphics

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LOCUS BAE16360 1860 aa linear 28-JUL-2005

DEFINITION type V/XI procollagen alpha 1 chain [Okamejei kenojei].

VRT

ACCESSION BAE16360

VERSION BAE16360.1 GI:71361203

DBSOURCE accession AB201247.1

KEYWORDS .

SOURCE Okamejei kenojei (ocellate spot skate)

ORGANISM Okamejei kenojei

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;

Elasmobranchii; Squalea; Hypnosqualea; Pristiorajea; Batoidea;

Rajiformes; Rajidae; Okamejei.

REFERENCE 1

AUTHORS Hwang,J., Yokoyama,Y., Mizuta,S. and Yoshinaka,R.

TITLE cDNA cloning and characterization of Type V/XI procollagen alpha 1

chain

JOURNAL Unpublished

REFERENCE 2 (residues 1 to 1860)

AUTHORS Hwang,J., Yokoyama,Y., Mizuta,S. and Yoshinaka,R.

TITLE Direct Submission

JOURNAL Submitted (27-JAN-2005) Yoshihiro Yokoyama, Fukui Prefectural

University, Division of Marine Bioscience; 1-1, Gakuen-cho, Obama

917-0003,Japan(E-mail:***************.jp,Tel:81-770-52-6003,

Fax:81-770-52-6300)

FEATURES Location/Qualifiers

source 1..1860

/organism=\"Okamejei kenojei\"

/db_xref=\"taxon:432798\"

Protein 1..1860

/product=\"type V/XI procollagen alpha 1 chain\"

Region 88..205

/region_name=\"LamG\"

Region /note=\"Laminin G domain; Laminin G-like domains are

usually Ca++ mediated receptors that can have binding

sites for steroids, beta1 integrins, heparin, sulfatides,

fibulin-1, and alpha-dystroglycans. Proteins that contain

LamG domains serve a variety of...; cd00110\"

/db_xref=\"CDD:29010\"

628..678

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

Region 781..838

/region_name=\"Collagen\"

Region Region /note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

820..>867

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

841..919

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

Region 1630..1859

/region_name=\"COLFI\"

/note=\"Fibrillar collagen C-terminal domain; cl02436\"

/db_xref=\"CDD:198675\"

CDS 1..1860

/gene=\"COL5/11A1\"

/coded_by=\"AB201247.1:298..5880\"

ORIGIN

1 mddrvrwkwk gwfwdsvltl qiailtltas vsavepvdil kilqldtlpd giervtglcp

61 nrkltstpdv aykvsrlaql saqtkqlypg dtpfpedfsl vmtvraqkgk gafllsiyne

121 qgiqqlgvsf pqphilyedh agqpspdehp ifrginladg kwhrvaisvh kktvtmivdc

181 tktltqplnr skrpvidtng ivvfgtrild edvfqgdvqq fliiadhraa ydycehyspd

241 cdsplpetpq nqdpdtldyd paadsyyyey pyyedinddk tkesedgaeg aetdfsaqit

301 gpitavpdqq etyptegpee vitvtipgtt aeaaideypt vetgyydnyd ddyyfpeltl

361 teetpekedn pssgqefene tsitferrvf shnattfedn sehtieivee aipgqgsrne

421 dkfnvttige edpntyfdef evyydyddvt vgpgapvltd tdyvrgdgir gekgekgepa

481 iiepgmlieg ppgsedppgv sghpgppgpp gpvgdpgsrg llgrsglpga

dglpgppgtm

541 lmlpfrftgg ggagekgpmv saqeaqaqai lqqarlalrg psgpmgltgr pgpigppgyl

601 gikgemgdlg pqgprgsqgp pgpmgksgrr grpgsdgarg ipgtsgrkgd rgfdglpglp

661 gekgnrgdag sqgqpgptge vgdrgddgev gprglpgepg prgllgpkgp agpagphgit

721 gmdghngpkg sqgpqgepgp pgqqgnpgaq glpgpqgaig ppgtngptgk pglpgvpgsd

781 gppghpgkeg psgekgnsgp agpqgpigyp gargikgadg irglmghkge kgedgfpgfk

841 gdmgikgdrg elgpagprge dgpegpkgrv gpsgdpgpgg pagekgklgv pglpgypgrq

901 agpkgnsgtd

gpkgsigfpg fpgangekgv rgtpgksgpr gqrgptgprg ergprgstgk

961 gppgptgerg ppgpqgpmgf agpkgppgpa gkdglpghpg qrgetgfqgk tgppgppgvv

1021 gpqgptgetg plgerghpgp pgppgeqglp gpagkegakg dpgpagpsgk dgppglrgft

1081 gerglpgplg qiglkgsegp pgppgslgsp gdrglagpag piglpgrpgp

qgppgpagek

1141 gtpgekgpqg pagrdgiqgp vglpgpagsa gppgedgdkg etgepgqkgs kadkgeqgpp

1201 gpsgpqgpig qpgpagadge pgprgqqglf gqkgdegprg flgppgpvgl qglpgsqgek

1261 getgdvgpmg ppgppgprgp sgspgadgpq gpaggignpg avgekgdsge pgapgpvgyi

1321 gqpgvrgerg ekgesgpsga agppgpkgpp gddgpkgspg pvgfpgdpgp pgeagapgqd

1381 gpsgdkgedg epgqtgspgp tgeagppgpp gkrgphgpag pegrqgekga kgdagaegpp

1441 gktgpvgpqg spgktgsegl rgipgpvgeq gfpgppgptg ppgpmgppgl pglkgdpgtk

1501 gekghpglig ligppgeqge kgdrglpgpq gvegskgdsg vhgqsgpigp pgppglsgpp

1561 gpkgskgstg ltgpkgelgv qgppglpgpa geviqslpfh ssrrakrsid asqfleegnp

1621 enyldyadgm eeifgslnsl kleieqmkhp mgtqnnpart ckdlylchpd fpdgeywidp

1681 nqgcsrdsfk vlcnvtsgge tcihpdkkse garvtawpke ipgswfsefk rgkllsyada

1741 egnpigvvqm tflrllsasa hqnltynchq tvawydstsd sydkairflg sndeemsydn

1801 npyiqalvdk caekkgyqkt ileintpkve qlpfidimfn dfgesgqkfg feigpvcfvg

//

Col1a1 [Scyliorhinus canicula] 小点猫鲨

GenBank: ABY71227.1

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LOCUS ABY71227 1237 aa linear VRT 31-OCT-2009

DEFINITION Col1a1, partial [Scyliorhinus canicula].

ACCESSION ABY71227

VERSION ABY71227.1 GI:165881922

DBSOURCE accession EU241868.1

KEYWORDS .

SOURCE Scyliorhinus canicula (smaller spotted catshark)

ORGANISM Scyliorhinus canicula

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;

Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes;

Scyliorhinidae; Scyliorhinus.

REFERENCE 1 (residues 1 to 1237)

AUTHORS Zhang,G. and Cohn,M.J.

TITLE Collagen distribution in developing sharks provides molecular

evidence for skin as exotendon and for the evolutionary loss of

bone

JOURNAL Unpublished

REFERENCE 2 (residues 1 to 1237)

AUTHORS Zhang,G. and Cohn,M.J.

TITLE Direct Submission

JOURNAL Submitted (23-OCT-2007) Zoology, University of Florida, 223 Bartram

Hall, Gainesville, FL 32611-8525, USA

COMMENT Method: conceptual translation supplied by author.

FEATURES Location/Qualifiers

source 1..1237

/organism=\"Scyliorhinus canicula\"

Protein Region Region /db_xref=\"taxon:7830\"

<1..>1237

/product=\"Col1a1\"

178..235

/region_name=\"Collagen\"

/note=\"Collagen triple helix repeat (20 copies);

pfam01391\"

/db_xref=\"CDD:1968\"

1021..1237

/region_name=\"COLFI\"

/note=\"Fibrillar collagen C-terminal domain; cl02436\"

/db_xref=\"CDD:198675\"

CDS 1..1237

/gene=\"Col1a1\"

/coded_by=\"EU241868.1:<1..>3712\"

/codon_start=2

ORIGIN

1 gppgkngddg ehgkagrpgd rgapgpqgar gfpgtpglpg ikghrgyngl dgakgdsgpa

61 gpkgetgspg engspgamga rgvpgergrs gapgpagarg ndgaaggaga pgpvgpagpp

121 gfpgapgakg eagvaggrgg dgpagargep gaagpagptg apgnagsdgq agakgatgap

181 gmsgapgfpg prgpsgaqga vgpsgpkgnt geggapgskg etgtkgepgs vgvqglpgpa

241 geegkrgarg ggplglkgat

301 gepgrpgeag rgqpgvmgfp

361 gpkgaagepg qgpggppgfq

421 glpgasgapg pgerggvgsp

481 gndgpkgdag dgapgkdggr

541 gmtgaigppg agppgadgqp

601 gakgevgdsg tgfpgaagrv

661 gppgpsgntg kgspgsdgpp

721 gasgipgpqg rgppgpmgpp

epgaqglpgv sgerggpgnr gfpgseglig pkgvpgergp

lpgargltgs pgspgadgkp gpagptgqdg ragppgsagp kggergpggp vgavgpagkd gdvgapgaag pagatgerge esgkpgeqgt hgdigapgan gprgergflg ergaagitga

apgapgsqgt pgiqgmpgdr gmsglpgakg vrgesgpkgg hsgapgekge agppgpsgpt ggrgapgerg esgspgpagf pkgdhgpqga igavgiagpt gpagppgskg argapgspga psapagavgk egakgirget gsagrpgepg nvgapgpage itgmrgivgm sgvrgergsm glsgktgepg kagpvgapgd

781 glagpsgesg regapgaega pgrdgasgpk gdrgepgtsg ipgapgapga pgpvgpsgkn

841 gdrgeagpsg pagpsgpmgp rgplgavgpr gdrgesgeag lrgikghrgf

tgmqglpgpt

901 gppgeqgpag ssgasgprgp pgpsgspgkd gasglpgpig ppgprgrngd mgpagppgap

961 gvpgppgpss ggfdfqfasp qvdkgpdplr cfrsddagav gdrdiqidtt lksltqqien

1021 irspegtrkn partcrdlkm chpewksgdy widpnqgctl dairvycnle tgetcvyssp

1081 qsipqknwyt tknpkekkhi wfgenmdggf qfgyggddgv lagdvaiqvt flrlmsseat

1141 qnityhckns iaymdeeagn lkkavllqgs neieiraegn srftysvsed gctrhtgewg

1201 rtvieykttk tsrlpiidia pmdvggadqe fgvdigp

//